I strongly believe that the current MS/pebble ratios are largely due to the fact that everyone is just starting the game. Everyone is trying to gene, everyone is trying to expand, everyone is trying to dress up. Everyone wants MS right now because everyone needs MS, because everyone is just starting out. The site is just shy of a month old, after all!
I really do think that this is only an issue right now due to the infamous “I need it right now and not a second later” attitude pet site players tend to have. How many launches on FR, even after all these years, are plagued with people whining about how they can't get all the things right this instant? When LW has an older player base (and also more currency in the economy) this won't be such a problem. For the record I do think the first expansions (professions and den) should be pebbles, but I do think it's not some awful game-killing decision to make the rest MS. With the subscription service, I have a feeling that in the future MS won't be nearly as hard to get ahold of, once people are finished with their expansions and don't really have too much to sink the MS into.